PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5226_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 187aa    MW: 21608.2 Da    PI: 6.1412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5226_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1859108355
                                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                         y GVr ++ +g+++AeIrd + ng   r++lg+f+t+eeAa a+++a+++++g
  cra_locus_5226_iso_2_len_792_ver_3  59 YIGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFDTEEEAALAYDQAALSMRG 108
                                         89******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.9E-3658122IPR001471AP2/ERF domain
PROSITE profilePS5103222.33958116IPR001471AP2/ERF domain
PRINTSPR003671.9E-95970IPR001471AP2/ERF domain
CDDcd000188.15E-3059116No hitNo description
Gene3DG3DSA:3.30.730.104.3E-3059117IPR001471AP2/ERF domain
PfamPF008479.2E-1459108IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2259117IPR016177DNA-binding domain
PRINTSPR003671.9E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDFSYIDYNS PSSSTSQDFD HHFYFTYNDD QEIKSKEPEE ELIFTITKSP QEKKKKGSYI  60
GVRKRPWGKY AAEIRDSTRN GMRVWLGTFD TEEEAALAYD QAALSMRGSS ATLNFPLKRV  120
QESLHNMFSS DECGLLSAVA LKEAHKIRNI WKRRSKKKQQ INVIKDVLVF EDLGSDLLDE  180
LLSESNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2759118362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2759118665ATERF1
3gcc_A4e-2759118665ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804882.12e-54PREDICTED: ethylene-responsive transcription factor 15-like
RefseqXP_016464424.11e-54PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8LDC82e-45ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A022S0A81e-51A0A022S0A8_ERYGU; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000344899e-49(Solanum tuberosum)